Sunday, October 3, 2010

Apologia Biology, Module 3, Kingdom Protista, Part B

Quizlet Vocabulary Game, M3 
M3 Recap Blog Post at Sahm-I-Am
Module 3, Part A.

Resources for Review:
Protists powerpoint - click thru the images
Protists online practice quiz - click the correct answer; see your score at the bottom.  Do as many times as you like.
Protists crossword - print


Kingdom Protista:  Subkingdom Algae


p. 69-70
Subkingdom Algae is divided into five phyla (pl. of phylum).
Each of the phyla for subkingdom Algae has one or more examples in the genus category given in the text.

Kingdom, Phylum, Class, Order, Family, Genus, species

The division for Algae is based on these three things:  
  1. habitat - they can live in marine (salt) water, or in fresh water.
  2. organization (single or multicellular) - Many algae exist as individual cells, but most form simple colonies, although a few colonies are quite complex.  Either way, their cells are all eukaryotic (having organelles, each with their own type of job).
  3. type of cell wall - what it is made of.



(1) p. 84-85, Subkingdom Algae
The members of subkingdom Algae can produce their own food by photosynthesis.
So why aren't they plants?  
According to an email from Apologia:
"When it comes to classification, there is no single rule that applies, and not every biologist agrees.  You probably remember that they don't even agree on how many kingdoms there are.  Algae, even multicellular algae, lack any of the structures of a plant.  They don't have true leaves, stems, or roots.  The blades in a kelp for instance have no veins to distribute nutrients, and both sides of a kelp blade are identical. The stipe on a kelp, while it looks like a stem, does not contain any of the vascular structures (xylem or phloem) to carry nutrients from the soil, and the holdfast just anchors the organism to the sea floor and does not have roots to draw nutrients.
In addition, some of the unicellular algae (like dinoflagellates), while photosynthetic, have flagella for movement more like an animal.
The sum of all of these distinctions is why algae and plants are considered to be parts of different kingdoms."
So that is why.  =D


Algae can live in warm or cold marine water (salt water) and in fresh water.   
This is the habitat category.
Algae is a type of plankton.  There are two groups - zooplankton and phytoplankton.
  • Zooplankton are tiny floating organisms that are either small animals or protozoa.
  • Phytoplankton are tiny floating photosynthetic organisms, primarily algae.
Based on these definitions, what we studied in the first half of Module 3 has mostly been zooplankton.
Now we will learn about phytoplankton.

We know that grass, trees, and other green plants produce the by-product oxygen during the process of photosynthesis.  (To the plant, it is a by-product; they produce it, but don't need it.)
But did you know that the majority of photosynthesis done on earth is not done by green plants, but is done by phytoplankton!?!  Phytoplankton (which is mainly algae) produce about three-fourths of all the oxygen on earth!
So I don't really think we'll run out of oxygen if someone cuts down a tree.  =)

Algae are also a major food source for many aquatic (water-living) organisms.
Humans have also found quite a few uses for algae.  Some algae is used as food in some parts of the world, and some is used as food additives.  One substance in a type of algae is used to thicken things like ice cream, pudding, and dressings.  There are other products made from algae as well:  iodine, vitamins, minerals, paper, floor polish, cosmetics, toothpaste, and more.

Many algae exist as individual cells, but most form simple colonies, although a few colonies are quite complex.
This is the organization category.
A colony is sometimes called a thallus (pl. is thalli) - the body of a plant-like organism that is not divided into leaves, roots, or stems.

When algae reproduce so rapidly that they essentially take over their habitat, the water appears to be the same color as the algae themselves.  This is called an algal bloom.



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(2) p. 85-86, Phylum Chlorophyta
Phylum: Chlorophyta
Habitat:  mostly fresh water
Organization:  single cells
Cell Wall:  cellulose
examples: genus Cosmarium or Desmid (same picture for both in the textbook), Chloroella, and Spirogyra

If you will remember the name of this phylum, Chlorophyta, it may help you remember that the most visible feature of these algae is that they contain the pigment chlorophyll, which is green.  Therefore they are referred to as green algae, even though most of them appear yellowish green because of other yellowish pigments present called carotenoids (kuh rot' en oydz).
Like Euglena, members of this phylum store the chlorophyll in organelles called chloroplasts.
Other main features of this phylum are that its members live mostly in fresh water, so you likely won't find them in the ocean.
And they have cell walls made of celulose (sel' yoo lohs), which is composed of certain types of sugar to feed the organism.

The following are green algae from three different genera (pl. of genus) from the phylum Chlorophyta.

phylum Chlorophyta, genus Chloroella.  
(see images)
These single-celled organisms clump together, but are not really in colonies.  
This has been made into vitamins.

phylum Chlorophyta, genus Cosmarium or Desmid.
(see images here and here)
These single-celled organisms sometimes form simple colonies, but mostly exist as individual cells.
They are characterized by the "pinched" look in the middle.  

phylum Chlorophyta, genus Spirogyra. 
(see images)
These single-celled organisms form colonies, called filaments, that can reach up to two feet long.

Green Algae
I don't think they "communicate" w/ one another. I believe it is a God-given instinct that they know exactly what to do.


phylum Chlorophyta, genus Desmid or Cosmarium


phylum Chlorophyta, genus Spirogyra form thread-like colonies






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(3) p. 87-88, Phylum Chrysophyta
Phylum: Chrysophyta
Habitat:  marine and fresh water
Organization:  single cells, some colonies
Cell Wall:  silicon dioxide
examples: genus Diatom, Dynobryon

This phylum Chrysophyta has more than 1,000 different species which are collectively called diatoms.
These algae are found in both marine and fresh water.
They are a unique type of algae, mostly because their cell walls are composed of silicon dioxide, which is the main component of glass.  This makes their cell wall very hard and protective.  This is why it remains hard long after the diatom dies.  When these remains are clumped together, they form a crumbly, abrasive substance called diatomaceous earth (die' uh tuh may' shus), or diatomite.

There are huge deposits of diatomaceous earth in most regions of the world.  Creation scientists think this may have happened at the time of the Flood.  (Genesis 6-9)  Scientists who do not believe the Bible have a hard time explaining these deposits of diatomaceous earth.

Diatomaceous earth is quite useful.  It is used for filtering liquids, or as an abrasive. (for example, in toothpaste.)  Insects can be killed by crawling over a thin coating of jagged diatomaceous earth.

Phylum Chrysophyta, genus Diatom
At The Microscopic Museum, see The Diatom Display 
These are beautiful!

Diatoms


See the diatoms that the kids in Michelle's class saw.


phylum Chrysophyta, genus Dynobryon
Another genus, Dynobryon (see images), is also a member of phylum Chrysophyta.  These contain algae that form colonies.  They usually contain a few cells called holdfasts, which can anchor them to objects in the water, like rocks.  These holdfasts form long strands so that the organism can stay in one place.




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(4) p. 88-89, Phylum Pyrrophyta
Phylum: Pyrrophyta
Habitat:  marine
Organization:  single cells
Cell Wall:  cellulose or atypical
examples: genus Peridinium (pehr' uh din' ee uhm), and  
genus/species Gymnodinium brevis (also called Karenia brevis)
 
Phylum Pyrrophyta is made up of a group of single-celled creatures often called dinoflagellates (see images), because most species have two flagella, one of which is in a groove that encircles the cell.  
These organisms are found in marine waters.
Some dinoflagellates are heterotrophic, obtaining their food from other sources, and some are photosynthetic, making their own food.

The most important thing about dinoflagellates is that certain species frequently bloom in nutrient-rich waters.  The species Gymnodinium brevis (see images) (also called Karenia brevis by some scientists) are reddish-brown in color, and their bloom turns the water red.
These algal blooms are called red tides. (see images)
These red tides are deadly to most to marine life, but mollusks, clams, and oysters are immune.  However, the toxin emitted by the dinoflagellate does build up in their bodies.  Eating clams, oysters, or mollusks that have been exposed to red tide can be poisonous.  Not only to humans, but other marine life that eat them.
Seafood restaurants do not serve these dishes when a red tide occurs in the area from where they get their supplies.
These tides are harmful to humans to even be around! It can cause burning eyes and respiratory problems.


►Read how one family was affected by a red tide. 

Red Tide in late 2007


Red Tide in Cocoa Beach, Fl, in late 2007
She says, "Look at all those single-celled, microscopic, dinoflagellate Karenia brevis."
What a mouthful.  =) (Remember, this is the same as Gymnodinium brevis.)





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We have learned that kingdom Protista includes eukaryotic organisms made up of a single cell, or simple association of single-celled organisms.
But we have also seen that every classification rule has its exceptions.  We often see the words "usually" or "most" as we learn about biology.
The following two phyla are made up of multi-celled organisms instead of single-celled.

(5) p. 89-90, Phylum Phaeophyta
Phylum: Phaeophyta
Habitat:  cold marine waters
Organization:  multiple cells
Cell Wall:  cellulose and alginic acid
examples: genus Macrocystis (mah' kroh sis' tus), genus Fū'cus 

Phylum Phaeophyta is made up of about 1,500 species of multicellular organisms that live in the cold ocean waters.
A multicellular organism is not the same as a colony of single-celled organisms.
►Single-celled organisms, although they may sometimes live in colonies, are not dependent on one another.  They can live on their own if separated from the colony.
►Multicellular organisms have individual cells that are designed for a specific task.  The cells work together, each performing the task for which it was designed.  They need each other to survive.  A single cell that is separated from a multicellular creature usually cannot exist on its own.

Members of phylum Phaeophyta, also called brown algae, look a lot like plants.
Species within the genus Macrocystis are commonly called kelp or seaweed. (see images) 
Kelp and most other members of phylum Phaeophyta form holdfasts (see image) to anchor themselves to rocks at the bottom of the ocean.  Some kelp can grow as long as 100 meters, growing as fast as 2 feet per day under ideal conditions.

If you enjoy ice cream, pudding, dressings, etc, you can be thankful that God made the members of this phylum.  One of their unique characteristics is that their cell walls contain alginic acid, commonly called algin.  This is extracted from brown algae and used to make a thickening agent in these kinds of foods.
Algin is used in other products as well.
Kelp is harvested in many parts of the world for food.


Another kind of seaweed nicknamed Turkish Washcloth (see images) is known for being rich in carrageenan, which is another thickening agent.



Phylum Phaeophyta, genus Fū'cus (see images) has species that are often called rockweed.  These algae are thick and feel leathery.  They live in shallow water along the shore, and are about one to two feet long.  On these alga (singular of algae) you can see air bladders, which fill with air to allow the organism to float on top of the water.




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(6) p. 91-92, Phylum Rhodphyta
Phylum: Rhodophyta
Habitat:  warm marine waters
Organization:  multiple cells
Cell Wall:  cellulose
example: genus Corallina (kor' uh lee' nuh), genus Hildenbrandia 

The last major phylum in subkingdom Algae is phylum Rhodophyta.
These are found in warm marine (salt) waters.
Members of this phylum are often called red algae because of their striking red color.  (Do not confuse this with the dinoflagellates that cause red tides.)

Phylum Rhodophyta, Genus/species Corallina officinalis (see images) is often called "coral weed."  It looks and feels a lot like coral.

From Phylum Rhodophyta, the genus Hildenbrandia (see images) are thin algae that grow in clumps (the red splotches) on underwater surfaces.



At The Microscopic Museum, see The Algae Exhibit.  He always has such awesome pictures.
See diatoms, phytoplankton, phaeocystis, and more.


Friday, October 1, 2010

Good and Bad Bacteria

A video from TVschoolhouse.com.  This is a great website!
Click to watch a 10-minute video about good and bad bacteria.  This is a good review of Module 2.
In the video, he talks about 3 kinds of bacteria - parasites, saprophytes, and autotrophs.
Why doesn't he mention heterotrophs?
Because parasites and saprophytes are the two kinds of heterotrophs - bacteria which do not make their own food.
What is mentioned that is made from bacteria that can save lives? 
Also learn about how bacteria take in food thru their cell walls.
Keep watching!  =)

Monday, September 27, 2010

Apologia Biology, Module 3, Kingdom Protista, Part A

Quizlet Vocabulary Game, M3 
M3 Recap Blog Post at Sahm-I-Am
Module 3, Part B

►Kingdom Monera is bacteria.  That's easy to understand.
►Best I can figure, kingdom Protista consists of organisms that are mostly found in water or some kind of moisture.  Some live in insects, humans, or animals.
Both of these kingdoms are microorganisms (seen with a microscope).
►Kingdom Monera (bacteria) are single-celled and are prokaryotic.
►Kingdom Protista is mostly single-celled, but single-celled or multicellular, their cells are eukaryotic (have distinct, membrane-bounded organelles).  Each organelle in the cell has a different job.  This adds more complexity to the organisms of kingdom Protista.

As a reminder, here are the differences in prokaryotic and eukaryotic cells:

As you can see, in addition to kingdom Protista, all the other kingdoms we will study later - Fungi, Plantae, and Animalia - also have eukaryotic cells.

►►Bacteria cells, Plant cells, and Animal cells.
Which kind are Protists?  Kingdom Protista has two divisions.
Subdivision Protozoa has cells that are animal-like.  Not animal cells, but animal-like cells.
Subdivision Algae consists of plant-like cells.


Look at the different parts (called organelles) of a Eukaryotic Cell.  Click on animal or plant cell.  
Different organelles have their own jobs to perform to maintain the life of the cell.  Hover over the organelles of the cell to learn their names.  Below the cell, hover over the names to see any organelles you may have missed.
Notice which organelles the animal cell does not have that the plant cell has, and vice versa.
The organelles that are in both cells, are they each the same shape?
You do not need to know all this now - that will come in a later module.  It is good to be familiar with this information.




(1) p. 67-70, Classification in Kingdom Protista
Kingdom Protista is divided into two subkingdoms:  subkingdom Protozoa, and subkingdom Algae.

Subkingdom Protozoa is divided into four phyla.  The division is based on locomotion - how they move.  To me, these are more interesting than the organisms in subkingdom Algae. 

Subkingdom Algae is divided into five phyla.  The division for Algae is based on three things: habitat, organization (single or multiple cells; one phylum has some colonies), and by type of cell wall.

Each of the nine phyla for subkingdoms Protozoa and Algae has one or more examples in the genus category given in the text.
There are many genera (pl. for genus) and in each genus category, there are many species.  Some examples are listed only by genus and are Capitalized and italicized, and some are specific and give both genus and species.  The species is only italicized, not capitalized.
(Think "general" and "specific", although 'genus' is not very general when you think about the fact that it is the 6th category in the Biological Classification system!)
Kingdom, Phylum, Class, Order, Family, Genus, species

Kingdom Protista:  Subkingdom Protozoa


(2) p. 71-73, Phylum Sarcodina
Phylum: Sarcodina
Locomotion: Pseudopods (false feet)
example: genus Amoeba (uh mee' buh)

►See images of amoebas!
Amoeba Dinner!
Watch this amoeba eat.  It uses its pseudopod locomotion to move and to engulf its prey.  To begin with, everything moves slowly until the prey realizes it is caught!


More amoebas.


Other Sarcodines - members of the Sarcodina phylum:
►Entamoeba gingivalis
►Entamoeba coli, or E. coli,(but not Escherichia coli)
►Entamoeba histolytica
The genus Entamoeba contains many organisms that live inside humans.
Which of these three ↑ are harmless, and which are harmful (and therefore a parasite)?
And what disease(s) do they cause?




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(3) p. 74-78a, Phylum Mastigophora
Phylum: Mastigophora
Locomotion: Flagellum
example: genus Euglena (yoo glee' nuh)

Euglena, from a pond


Euglena's movement by whirling its flagella, and by drawing its cytoplasm into the central region of the cell, then re-extending itself forward.



Euglena are both heterotrophs and autotrophs (p. 74)
(Although some biologist say to be an autotroph, it has to only make its own food, and not acquire it elsewhere.)
But if a Euglena is deprived of light too long, it will no longer be able to make its own food, even if it has plenty of light later.
Euglena are saprophytic heterotrophs since they only feed on dead things, and therefore they are also decomposers.

To Clarify:
Heterotrophic bacteria can be saprophytes, and therefore also a decomposer.
Heterotrophic bacteria can be parasites, and are not decomposers.
Autotrophic bacteria manufacture their own food by chemosynthesis or photosynthesis.




In the following video, the boys says the Euglena "can be a plant or an animal, depending..."
Per my email to Apologia, "it it neither a plant nor an animal; it is considered a protist."
Also, Euglenas do not use their "eye" to see.  It is there to sense light and the Euglena is drawn toward the light, but it cannot see the light.



See different types of protists with flagella.  Since these organisms that are from the kingdom Protista, subkingdom Protozoa, and all have flagella, they are in the phylum Mastigophora.  
Not all the genera (pl. for genus) in the phylum Mastigophora are euglena.  Euglena is perhaps the most common.


Volvox Reproduction



►See a closeup of a volvox colony.  You can even see the flagella and eyespots!  Also see the thin strands of cytoplasm holding it together.  It is awesome how they organize themselves like little planets with North and South poles.  Scroll down.
So beautiful!  And our Creator made this!  =D  This is a terrific page!




Other Mastigophorites - members of the phylum Mastigophora: 
►Volvox
►Trypanosoma
►Trichonympha
Which of these three ↑ live in colonies?  How do they move?
Which one is beneficial to a termite?  Why?
Which one is carried by the tsetse fly and causes disease? (this would make it a parasite)  What disease?




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(5) p. 78-79, Phylum Ciliophora
Phylum: Ciliophora
Locomotion: Cilia (sil' ee uh)
example: genus Paramecium (pair uh mee' see um)


A paramecium moves by beating the tiny "hairs" on its edge.  These are called cilia.
Paramecia have an oral groove where they take in food.  You can see the oral groove around 40 seconds when it starts turning over several times.
The little "blobs" throughout are food vacuoles.  After a paramecium takes in food through the oral groove, it pinches off a little section with the food inside it.  This is now a food vacuole, and it will move to other parts of the paramecium, taking food to its whole body.



Other Ciliates - members of the phylum Ciliophora:
►Stentor
►Balantidium coli
Which of these is shaped like a trumpet?  What does it eat?  How does it get its food?
Which of these is a parasite found in fecal matter of many species?



Flagella and Cilia
Here is a video that shows some protists from different phyla. You should recognize most of these names.
Look at p. 62 in your textbook.  These are some organisms found in pond water, and now you will be able to recognize many of them.
►Chlamydomonas are green algae, which we will be studying in the second half of the module.
►Phacus, a Euglenoid, then "relatives of Phacus".  They are species of the genus Euglena.
►Paramecia, mentioned above.
►Stentor, mentioned above.

Watch the food move down thru the stentor.






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(6) p. 80-83, Phylum Sporozoa
Phylum: Sporozoa
Locomotion: None
example: genus Plasmodium (plaz' moh dee um)

The genus Plasmodium is home to a very deadly sporozoan.  They are parasites.  They form spores while in the mosquito, but while in a human they multiply in a different way, and can multiply very rapidly.
Study the spore formation stages on p. 80.

Sporozoa



Study the Life Cycle of Plasmodium on p. 81
How a Mosquito spreads Malaria


Sadly, this is true.



Another typical sporozoan - member of the phylum Sporozoa: 
►Toxoplasma gondii
This sporozoan parasite can live in mammals, particularly what animal?
Pregnant women are told to not clean up after these particular animals because it may cause what?
The spores can be spread further by houseflies, cockroaches, insects.
►Once infected with a Toxoplasmic parasite, a person will have it the rest of their life.  See a video about the Toxoplasma parasite.

Friday, September 17, 2010

Pythagorean Theorum

(1) The Pythagorean Theorum


(2) Converse of Pythagorean Theorum


(3) Several examples


(4) YayMath.org - Pythagorean Theorum

Algebra - Pythagorean Theorem from Yay Math on Vimeo.


►Interactive math game.  After doing a few, you'll see the pattern.  =)
Click the Help tab for instructions.

Tuesday, September 14, 2010

Trigonometric Ratios - sine, cosine, tangent

After watching these videos, see if you can complete these sentences using the words sine, cosine, and tangent.  Write the the following completed sentences in your notebook.
soh-cah-toa
1. Out of the three measurements, the _______________ is the denominator two different times.
2. The _______________ is never the denominator.


(1) Explanation of sine, cosine, tangent


(2) Several examples, very good.


(3) YayMath.org - uses a graphing calculator, if you're that far into trig.  (hehe, not me!)
►Accompanying worksheet for this video.